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- Load scans images from select directory - Structure of data directory : Nt Scans and Np images by scans, Each images corresponds to an acquisition area of size [Nx,Ny] and they are spatially separated by a distance corresponding to the StepSize variable (µm). Depending on parameters there may be an overlap between images. - Extract averaged Intensity that depend on time and space I(x,t) - Compute dI_dx and d2I_dx2 using fit with Erf(x) model - Compute dI_dt with np.grad - Try D = d2I_dx2/dI_dt and Least square methods to extact diffusion coef and advection velocity. - Also containt a 2d fit methods but give bad results for the moment. |
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| __pycache__ | ||
| CMF Diffusion | ||
| Tools codes | ||
| Toron Dynamic | ||
| Functions.py | ||
| Phase_diag.py | ||
| README.md | ||
| Toron_POO.py | ||
Repository for storing all numerical analysis code for CHIRALGHOST project